PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033535m
Common NameCICLE_v10033535mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 297aa    MW: 33072.7 Da    PI: 6.9662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033535mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-06117136120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C+k+F+r  n++ H+
  Ciclev10033535m 117 FSCPVCNKTFNRYNNMQMHM 136
                      89*****************9 PP

2zf-C2H213.90.00016202224123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk+F  + + ++H +++
  Ciclev10033535m 202 FGCRKCGKPFAVRGDWRTHEKNC 224
                      56*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-598138No hitNo description
SMARTSM003550.025117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305117144IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-7117136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128746.8E-5117136No hitNo description
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SMARTSM00355200165197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.27E-5185222No hitNo description
Gene3DG3DSA:3.30.160.606.8E-5188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQTPAPFAYI SSSEGACFEA ADEQHQDEDS IVLSLGPPGQ RVSKHSTSNQ LLAHNNNHQN  60
PTSHHSGVTV ALHIGPPTAE AAGSTSNPTP NDIVNKLVEG QYWIPSPEQI LVGPTQFSCP  120
VCNKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKAVSSML RLPCYCCAEG CKNNIGHPRS  180
RPLKDFRTLQ THYKRKHGAK PFGCRKCGKP FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR  240
SLKDHVRSFG DGHAPHTVEF GREVEEDEDE DNDFDEEEDE VDGGDINGSV LSFKYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437731.10.0hypothetical protein CICLE_v10033535mg
SwissprotQ9FX681e-124ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLV4TMB20.0V4TMB2_9R
STRINGVIT_01s0011g03100.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-123C2H2-like zinc finger protein